Child protection review announced

The Scottish Government announces a wide-ranging review of guidance on child protection practices.

news.bbc.co.uk

DNA database 'breached rights'

Keeping the DNA of two Britons with no convictions was a breach of their human rights, a European court rules.

news.bbc.co.uk

US Congresswoman hangs up on Obama

A US Congresswoman hangs up the phone on President-elect Barack Obama, thinking the call is a hoax.

news.bbc.co.uk

Controversial Lapland theme park closes down

The firm running a Lapland-style theme park in the New Forest criticised by visitors as "hell" and a "scam" close it down.

news.bbc.co.uk

Pompey crash out after defeat

Portsmouth exit the Uefa Cup after they lose to Bundesliga side Wolfsburg.

news.bbc.co.uk

Nice smell...

But why else would anyone buy a new car these days?

news.bbc.co.uk

Rhys killing 'appalled country'

The murder of schoolboy Rhys Jones was a terrible killing which appalled the whole country, a judge tells a jury in his summing up.

news.bbc.co.uk

Secondary school closures agreed

A council agrees to close three secondary schools and create a new Welsh medium school as part of its reorganisation plans.

news.bbc.co.uk

Smith accused of raid 'ignorance'

Jacqui Smith is attacked for not knowing a Tory MP was to be arrested, as her predecessor says she should have been told.

news.bbc.co.uk

Kenya PM calls for Mugabe removal

Power-sharing in Zimbabwe is dead and Africa must unite to oust President Mugabe, says Kenya's prime minister.

news.bbc.co.uk

Cash glow

How much does a street light cost for one night?

news.bbc.co.uk

Menezes family's inquest protest

The family of Jean Charles de Menezes have walked out of the inquest into his death at the Oval Cricket Ground in London in protest.

news.bbc.co.uk

Pakistan dilemma

Relations with India strained in wake of the Mumbai attacks

news.bbc.co.uk

Your pictures

Readers' images of snowfalls across the UK

news.bbc.co.uk

Nasa delays its next Mars mission

The US space agency (Nasa) has delayed the launch of its Mars Science Laboratory rover mission from 2009 to 2011.

news.bbc.co.uk

Villa through despite Uefa Cup loss

Aston Villa falll to a shock defeat to MSK Zilina but still reach the Uefa Cup's last 32, thanks to Hamburg's victory over Slavia Prague.

news.bbc.co.uk

Carmakers 'affect entire US economy'

General Motors boss Rick Wagoner and his Ford counterpart Alan Mulally admit making mistakes in the way they ran the firms.

news.bbc.co.uk

No decision over Shields pardon

The High Court reserves judgement in the case of jailed Liverpool fan Michael Shields, who has started a pardon bid.

news.bbc.co.uk

DNA dilemma

Will European ruling result in more unsolved crimes?

news.bbc.co.uk

Honda poised to quit Formula One

Japanese car giant Honda will withdraw from Formula One on Friday and place its team up for sale, BBC Sport understands.

news.bbc.co.uk

Mother guilty over Shannon kidnap

Shannon Matthews's mother and co-accused Michael Donovan are convicted of kidnapping the nine-year-old in a plot to claim a £50,000 reward.

news.bbc.co.uk

Bank cuts UK rates to 57-year low

The Bank of England has cut interest rates by one percentage point from 3% to 2%, their lowest level since 1951.

news.bbc.co.uk

Send your video, pictures and story ideas

Have you got a good story? BBC News wants to hear from you.

news.bbc.co.uk

Interest rates

Which lenders are passing on the rate cuts to customers?

news.bbc.co.uk

HET will continue 'crucial work'

The special police team set up to investigate murders during the troubles is to make 75 staff redundant.

news.bbc.co.uk

 World Catalog > Science > Biology > Bioinformatics > Software > Software Development

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World Catalog > Science > Biology > Bioinformatics > Software > Software Development

Software Development:

AceDB

A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.

http://www.acedb.org/

AcePerl

OO Interface to AceDB

http://stein.cshl.org/AcePerl/

Graand

Free Classified Ads Portal

www.graand.com

Bielefeld University Bioinformatics Server

BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.

http://bibiserv.techfak.uni-bielefeld.de/

Biochemical Algorithms Library

C++ framework for rapid software prototyping in molecular modeling.

http://www.bioinf.uni-sb.de/OK/BALL/

BioJava.org

The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.

http://biojava.org/

BioLisp.org

BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.

http://nostoc.stanford.edu/Docs/

Bionconductor

The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.

http://www.bioconductor.org/

BioPHP

An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.

http://www.biophp.org

BioPython

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

http://biopython.org/

BioQuery

Tools that searches multiple biomedical databases from your desktop.

http://www.bioquery.org/

BioRuby

BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.

http://bioruby.org

The BioSharp Project

BioSharp is an open-source project to provide a framework for processing biological data using C# and other .net languages.

http://biosharp.sourceforge.net/

BioWarehouse Database Integration System

Integrates multiple public bioinformatics databases into a single relational database system within a common bioinformatics schema.

http://biowarehouse.ai.sri.com/

Brainwave Biosolutions

Bioinformatics Company focused on the development of data mining products, databases, visualization and analysis tools.

http://www.brainwave.in/

Cell Electrophysiology Simulation Environment (CESE)

A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.

http://cese.sourceforge.net/

CLEML: Carbon Labeling Experiment Markup Language

CLEML open format for representing and exchanging 13C metabolic flux analysis models.

http://sg.ustc.edu.cn/MFA/cleml/

The Darwin Manual

Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.

http://www.inf.ethz.ch/personal/gonnet/DarwinManual/DarwinManual.html

DW Computing

Web design, computer sales, and custom programming, including bioinformatics.

http://www.DWcomputing.com

Dynamite

Code generator for writing dynamic programming programs.

http://www.ebi.ac.uk/Dynamite/

EST2uni

A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.

http://www.melogen.upv.es/genomica/web_estpipe/index.php

High Throughput Screening Tools

Analytical tools and SQL scripts that solve common problems in drug discovery.

http://www.htstools.com/

InterMine

A general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.

http://www.intermine.org

JCell

A Java based framework to reconstruct genetic interactions from microarray data.

http://www-ra.informatik.uni-tuebingen.de/software/JCell/

MolTalk

Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.

http://www.moltalk.org/

NCICB Core Infrastructure

The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.

http://ncicb.nci.nih.gov/NCICB/infrastructure

NeoBio

An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.

http://neobio.sourceforge.net

Pathway Tools

Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.

http://bioinformatics.ai.sri.com/ptools/

Phylogenetic Analysis Library

PAL library is a Java toolkit for determining evolutionary trends.

http://www.cebl.auckland.ac.nz/pal-project/

PISE

Given an abstract definition of a program's parameters, PISE can generate whatever style of interface from the configuration module.

http://www.pasteur.fr/recherche/unites/sis/Pise/

The Scriptome

A set of software tools that filter, format, and merge data in tabular or common biological formats. Organized as a classified collection of Perl one-liners.

http://sysbio.harvard.edu/csb/resources/computational/scriptome

Sight

Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.

http://bioinformatics.org/jSight/

The XEMBL Project

XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.

http://www.ebi.ac.uk/xembl/

Smith accused of raid 'ignorance'

Jacqui Smith is attacked for not knowing a Tory MP was to be arrested, as her predecessor says she should have been told.

news.bbc.co.uk

Bank cuts UK rates to 57-year low

The Bank of England has cut interest rates by one percentage point from 3% to 2%, their lowest level since 1951.

news.bbc.co.uk

Carmakers 'affect entire US economy'

General Motors boss Rick Wagoner and his Ford counterpart Alan Mulally admit making mistakes in the way they ran the firms.

news.bbc.co.uk

DNA database 'breached rights'

Keeping the DNA of two Britons with no convictions was a breach of their human rights, a European court rules.

news.bbc.co.uk

Controversial Lapland theme park closes down

The firm running a Lapland-style theme park in the New Forest criticised by visitors as "hell" and a "scam" close it down.

news.bbc.co.uk

Send your video, pictures and story ideas

Have you got a good story? BBC News wants to hear from you.

news.bbc.co.uk

Child protection review announced

The Scottish Government announces a wide-ranging review of guidance on child protection practices.

news.bbc.co.uk

HET will continue 'crucial work'

The special police team set up to investigate murders during the troubles is to make 75 staff redundant.

news.bbc.co.uk

Honda poised to quit Formula One

Japanese car giant Honda will withdraw from Formula One on Friday and place its team up for sale, BBC Sport understands.

news.bbc.co.uk

DNA dilemma

Will European ruling result in more unsolved crimes?

news.bbc.co.uk

US Congresswoman hangs up on Obama

A US Congresswoman hangs up the phone on President-elect Barack Obama, thinking the call is a hoax.

news.bbc.co.uk

Secondary school closures agreed

A council agrees to close three secondary schools and create a new Welsh medium school as part of its reorganisation plans.

news.bbc.co.uk

Mother guilty over Shannon kidnap

Shannon Matthews's mother and co-accused Michael Donovan are convicted of kidnapping the nine-year-old in a plot to claim a £50,000 reward.

news.bbc.co.uk

Pompey crash out after defeat

Portsmouth exit the Uefa Cup after they lose to Bundesliga side Wolfsburg.

news.bbc.co.uk

Nasa delays its next Mars mission

The US space agency (Nasa) has delayed the launch of its Mars Science Laboratory rover mission from 2009 to 2011.

news.bbc.co.uk

No decision over Shields pardon

The High Court reserves judgement in the case of jailed Liverpool fan Michael Shields, who has started a pardon bid.

news.bbc.co.uk

Menezes family's inquest protest

The family of Jean Charles de Menezes have walked out of the inquest into his death at the Oval Cricket Ground in London in protest.

news.bbc.co.uk

Nice smell...

But why else would anyone buy a new car these days?

news.bbc.co.uk

Your pictures

Readers' images of snowfalls across the UK

news.bbc.co.uk

Rhys killing 'appalled country'

The murder of schoolboy Rhys Jones was a terrible killing which appalled the whole country, a judge tells a jury in his summing up.

news.bbc.co.uk

Pakistan dilemma

Relations with India strained in wake of the Mumbai attacks

news.bbc.co.uk

Interest rates

Which lenders are passing on the rate cuts to customers?

news.bbc.co.uk

Cash glow

How much does a street light cost for one night?

news.bbc.co.uk

Villa through despite Uefa Cup loss

Aston Villa falll to a shock defeat to MSK Zilina but still reach the Uefa Cup's last 32, thanks to Hamburg's victory over Slavia Prague.

news.bbc.co.uk

Kenya PM calls for Mugabe removal

Power-sharing in Zimbabwe is dead and Africa must unite to oust President Mugabe, says Kenya's prime minister.

news.bbc.co.uk